Name: RenLab-HiC-cortex, Rep1
Organism: Mus musculus
Source: Mouse ES
RE: HindIII
Sample ID: GSM892304
| File | SRR442145 | SRR442146 | SRR442147 | SRR442148 | SRR442149 |
|---|---|---|---|---|---|
| Total reads | 58,553,203 | 56,102,527 | 57,935,274 | 57,089,636 | 86,465,083 |
| First pair aligned | 51,602,560 (88.13%) | 49,880,384 (88.91%) | 51,893,560 (89.57%) | 51,099,917 (89.51%) | 76,929,800 (88.97%) |
| Second pair aligned | 47,885,771 (81.78%) | 48,755,715 (86.90%) | 51,101,055 (88.20%) | 50,370,013 (88.23%) | 75,110,991 (86.87%) |
| PCR duplicate paired reads | 1,788,981 (3.06%) | 1,826,462 (3.26%) | 2,007,510 (3.47%) | 1,963,802 (3.44%) | 3,743,746 (4.33%) |
| Chimeric paired reads | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) |
| Valid chimeric paired reads | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) | 0 (0.00%) |
| Total mapped/paired reads | 31,029,410 (52.99%) | 31,660,555 (56.43%) | 33,138,817 (57.20%) | 32,638,099 (57.17%) | 48,713,987 (56.34%) |
| Valid mapped/paired reads | 29,240,429 (49.94%) | 29,834,093 (53.18%) | 31,131,307 (53.73%) | 30,674,297 (53.73%) | 44,970,241 (52.01%) |
| File | SRR442150 |
|---|---|
| Total reads | 85,145,369 |
| First pair aligned | 75,767,102 (88.99%) |
| Second pair aligned | 73,952,985 (86.85%) |
| PCR duplicate paired reads | 3,663,545 (4.30%) |
| Chimeric paired reads | 0 (0.00%) |
| Valid chimeric paired reads | 0 (0.00%) |
| Total mapped/paired reads | 47,986,086 (56.36%) |
| Valid mapped/paired reads | 44,322,541 (52.06%) |
| Total reads | 210,172,908 |
| Chromosome not in fends | 0 (0.00%) |
| PCR duplicates | 0 (0.00%) |
| Outide RE cutsite range | 4,309,324 (2.05%) |
| Insert larger than cutoff | 91,118,809 (43.35%) |
| Fragment circularization | 2,377,450 (1.13%) |
| Possible failed RE digest | 22,524,868 (10.72%) |
| Valid cis reads | 29,231,199 (13.91%) |
| Valid trans reads | 60,611,258 (28.84%) |
| Unique cis fend pairs | 22,737,997 |
| Unique trans fend pairs | 50,764,031 |